PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P05310_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 229aa    MW: 25726.1 Da    PI: 6.3756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P05310_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.3e-1165113354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            +++  rE+ RRdr+N++f+eL ++l ++   + ++ +Ka+iL  A++ + +L
  GSMUA_Achr4P05310_001  65 KSKACREKVRRDRLNERFHELSSVLDPN---RPPRADKASILGDATRVLMQL 113
                            56789**********************9...99**************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-1353128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.69762113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-1265135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-765118No hitNo description
PfamPF000102.8E-866113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-1068119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGTDPIEDFW IDGGDSDGEL QYALGSFRDM VPTAGMGNEE TQRDFRSLEQ NSSGKRARNE  60
PHTSKSKACR EKVRRDRLNE RFHELSSVLD PNRPPRADKA SILGDATRVL MQLRAEAQEL  120
KESNEKLHEA IKDLKVEKNE LREEKMRLKA DKDKLEQQIK VLSVPPAGFL PHPMAFHPAA  180
APAAFVPQIQ ASTDKTAPFA GFPGMAMWQW LPPAVMDTTQ DPKLWPPNA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395404.11e-169PREDICTED: transcription factor ILR3-like
SwissprotQ9FH371e-56ILR3_ARATH; Transcription factor ILR3
TrEMBLM0SL981e-169M0SL98_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P05310_0011e-169(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-54bHLH family protein